7lbw_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TFAM (MITOCHONDRIAL TRANSCRIPTION FACTOR A) BRIDGING TWO NON-SEQUENCE SPECIFIC DNA SUBSTRATES (Transcription factor A, mitochondrial)
reference	Garcia-Diaz et al. 'Nucleic 50 322 2022
source	Homo sapiens
experiment	X-ray (resolution=2.84, R-factor=0.200)
structural superfamily	HMG-box;
sequence family	HMG high mobility group box;
multimeric complexes	3tq6_AB 6erp_ACF 6erp_BGJ 6erq_ACF 6erq_BGJ 6hb4_ADGJ 6hc3_ADGJ 7lbw_AB
reference complex	3tq6_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lbw_B interface=12,14,15,18,22,34,35,38,100,104,114,119,120,123,127,135,136,139, svlascpkkpvSsYLrfSkeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrr
interface signature	SYLSLTTIMKRYNVFPQL

Estimated binding specificities ?

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# IC=9.811 IC/col=0.363 n_of_columns=27

specificity:

A |   0   0   0   4  24  24  24  12  24  24  24  24  24  24  24  24  24  24  24  24  72  24  24  84  96   4   4
C |   4  96   0  84  24  24  24   8  24  24  24  24  24  24  24  24  24  24  24  24  16  24  24   4   0   0   4
G |  92   0   0   4  24  24  24  60  24  24  24  24  24  24  24  24  24  24  24  24   4  24  24   4   0  92  84
T |   0   0  96   4  24  24  24  16  24  24  24  24  24  24  24  24  24  24  24  24   4  24  24   4   0   0   4

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updated Mon Dec 18 20:51:20 2023