6raw_6 : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	D. MELANOGASTER CMG-DNA, STATE 1A (DNA REPLICATION LICENSING FACTOR MCM6)
source	DROSOPHILA MELANOGASTER
experiment	NMR
structural superfamily	Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence family	MCM2/3/5 family;
redundant complexes	6rax 6ray 6raz
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6raw_6 interface=382, vkdevgiraqklfqdfleefkedgeikytrpaaslespdrctlevsfedvekydqnlataiieeyyhiypflcqsvsnyvkdriglktqkdcyvaftevptrhkvrdlttskigtlirisgqvvrthpvhpelvsgvfmcldcqteirnveqqfkftnpticrnpvcsnrkrfmldvekslfldfqkiriqetqaelprgcipraveiilrselvetvqagdrydftgtlivvplagvgtraenlnyrmaflacsvqattarfggtdtaedmkkqmtdaewhkiyemskdrnlyqnlisslfpsiygndevkrgillqqfggvaktttektslrgdinvcivgdpstaksqflkqvsdfspraiytsgkassaagltaavvRdeesfdfvieagalmladngiccidefdkmdqrdqvaiheameqqtisiaragvratlnartsilaaanpingrydrskslqqniqlsapimsrfdlffilvdecnevvdyaiarkivdlhsnieesveraytreevlryvtfarqfkpvisqeaghmlvenyghlrqrdtgritvrqlesmirlseamaklecsnrvlerhvkeafrllnksiirveq

  
  ----------------------RT--------                                     +--6raw_6    
                                                                   +---2 
  ----------------------RT--------                                 !   +--6u0m_6    
                                                                 +-8 
  ----------------------RT--------                               ! !   +--6xtx_7    
                                                                 ! ! +-3 
  ----------------------------FTAT                               ! +-7 +--6xtx_6    
                                                             +---9   ! 
  --------------------------RT----                           !   !   +----6raw_5    
                                                             !   ! 
  ------------------------ET--YT--                           !   !   +---6mii_F    
                                                             !   +---6 
  ----------------------------LT--                           !       ! +--6xtx_4    
                                                        +---10       +-4 
  ----------------------------WT--                      !    !         +--6u0m_2    
                                                        !    !  
  ----------------------KT--------                      !    !          +-6sko_7    
                                                        !    !        +-1 
  ----------------------------YT--                 +---13    +--------5 +-6sko_6    
                                                   !    !             ! 
  ----------------------------WT--                 !    !             +--6sko_2    
                                                   !    !  
  --------------------VT----------              +-14    !   +------------6raw_3    
                                                !  !    +--11  
  --------------FA----------------              !  !        +------------6u0m_7    
                                                !  !  
  ----------------------RT--------       +-----15  !      +--------------6xtx_5    
                                         !      !  +-----12  
  RTETKTRTMTRTFT--RT--------------   L   !      !         +--------------4pog_H    
                                       -16      !  
  ----------------------------FT--       !      +---------------------6sko_5    
                                         !  
  ------------------NT------------   L   +----------------------------4gdf_A

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updated Mon Dec 18 17:45:09 2023