interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF S. COELICOLOR/S. VENEZUELAE BLDC-SMEA-SSFA COMPLEX TO 3.09 ANGSTROM
(Putative DNA-binding protein)
reference'Nat 9 1139 2018 X-RAY DIFFRACTION
sourceStreptomyces venezuelae
experimentX-ray (resolution=3.09, R-factor=0.215)
structural superfamilyPutative DNA-binding domain;
sequence familyMerR family regulatory protein;
multimeric complexes6ama_ABCDGHKLOPY
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDKRH

Estimated binding specificities ?

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# IC=6.337 IC/col=0.704 n_of_columns=9 specificity:   
A |  62  24  24   7   7   0   5   0  96
C |  16  24  24  79   5   0   5   0   0
G |   5  24  24   5  79  90  81   0   0
T |  13  24  24   5   5   6   5  96   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RGHTHC----YG   L       +-----------------------------1r8d_B    
                       +-1 
  RGRTYT----RT   L   +-2 +-----------------------------4r4e_B    
                     ! ! 
  YTRTFC--KG--   L --3 +-----------------------------5d8c_A    
                     ! 
  ECQT--RGRTHT   L   +-----------------------------5c8e_C    
                   

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updated Tue Dec 19 12:15:21 2023