interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF MTAN BOUND TO DNA
(transcription activator MtaN)
referenceNewberry et al.
sourceBacillus subtilis
experimentX-ray (resolution=2.70, R-factor=0.234)
structural superfamilyPutative DNA-binding domain;
sequence familyMerR family regulatory protein; MerR, DNA binding;
multimeric complexes1r8d_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRHHY

Estimated binding specificities ?

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# IC=5.766 IC/col=0.641 n_of_columns=9 specificity:   
A |  16  24  24  16  24  96   0   0   0
C |  54  24  24  13  24   0  96   0  96
G |  13  24  24  13  24   0   0  96   0
T |  13  24  24  54  24   0   0   0   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RGHTHCYG   L      +----------1r8d_B    
                 +--2 
  KGRTFCYG   L   !  +----------4wls_B    
               --3 
  KGRT----   L   !           +-5i44_I    
                 +-----------1 
  RCRT----                   +-7tec_A    
               

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updated Tue Dec 19 06:04:36 2023