interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF GLNR-DNA COMPLEX
(HTH-type transcriptional regulator GlnR)
reference'Genes 29 451 2015
sourceBacillus subtilis subsp. subtilis
experimentX-ray (resolution=2.57, R-factor=0.254)
structural superfamilyPutative DNA-binding domain;
sequence familyMerR family regulatory protein;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRR

Estimated binding specificities ?

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# IC=5.849 IC/col=0.836 n_of_columns=7 specificity:   
A |   0   0  24  57  13   0  96
C |   0   0  24  13  13   0   0
G |  96   0  24  13  57   0   0
T |   0  96  24  13  13  96   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RART----       +----------4r24_B    
                 ! 
  RGRTYTKT   L   !           +7tea_B    
               --4         +-1 
  RGHTHCYG   L   !       +-2 +1r8d_B    
                 !       ! ! 
  KGQGRT--   L   +-------3 +5i44_I    
                         ! 
  RCRT----               +--7tec_A    
               

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updated Tue Dec 19 09:24:00 2023