5mpf_B : 3D-footprint complex

structure name	STRUCTURAL BASIS OF GENE REGULATION BY THE GRAINYHEAD TRANSCRIPTION FACTOR SUPERFAMILY (Grainyhead-like protein 1 homolog)
reference	Schmidt-Ott et al. 'Nucleic 46 2082 2018
source	Homo sapiens
experiment	X-ray (resolution=2.92, R-factor=0.230)
sequence family	CP2 transcription factor;
multimeric complexes	5mpf_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5mpf_B interface=161,166,169, nnfeytleaskslrqkstmtylnkgqfypitlkevsskvrsvimvvfaedksredqlrhwkywhsrqhtakqrcidiadykesfntisnveeiaynaisftwdindeakvfisvnclstdfssqkgvkglplniqidtysynnrsnkpvhraycqikvfcDkgaeRkiRdeerkqskrkmditvfkpfidldtqpvlfipdv
interface signature	DRR

Estimated binding specificities ?

readout + contact

# IC=4.046 IC/col=0.809 n_of_columns=5

specificity:

A |  69  67  69   0   0
C |   9   9   9  96  96
G |   9   9   9   0   0
T |   9  11   9   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --DT----RGRA   L   +---------------5mpf_B    
                     ! 
  --ATCTRG----     --3                +3qyn_C    
                     ! +--------------1 
  ------RA----       +-2              +5mg7_A    
                       ! 
  RGATCTRG----   L     +--------------3q05_B

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updated Tue Dec 19 10:54:35 2023