| structure name | CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BFII C-TERMINAL RECOGNITION DOMAIN IN COMPLEX WITH COGNATE DNA (RESTRICTION ENDONUCLEASE) |
| reference | Sasnauskas et al. |
| source | BACILLUS FIRMUS |
| experiment | X-ray (resolution=3.20, R-factor=0.180) |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | ARQTYWRENNFDRRN |
Estimated binding specificities ?
| readout + contact |  |
A | 8 87 0 0 0 0 11 69 C | 69 0 96 0 0 0 8 8 G | 8 9 0 0 96 96 69 11 T | 11 0 0 96 0 0 8 8scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: BFII | ||
| ACTGGG | PubMed | 3zi5_A(6.24e-06) |
| CCTGG | PubMed | 3zi5_A(1.00e-03) |
Dendrogram of similar interfaces ?
matrix formatAC--RG--QTTA--YCWCRA----ET----NGNGFADC--RGRCNC L +-----------3zi5_A +--6 ----------RGHG--LC------YC--RGYG--EC--RT------ L ! +-----------5o63_B ! --KA--ST--LT--RGIT----WCNT--------MA---------- L ! +6j9b_A --7 +-2 ----------HG--------------RG----PT------------ L ! +--------4 +6ycq_A ! ! ! ----------------ST--------RC----PT------------ L ! ! +-6sdg_B +---5 ------ST------RG------WCNC--------MA---------- L ! +6j9c_D +---------3 ----------IT--RGVT--WC--NCNT------MA---------- L ! +6fas_B +-1 ----------IT--RGVT--WC--NCNG------MA---------- L +5yzz_C |
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updated Tue Dec 19 08:33:06 2023