6fas_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VAL1 B3 DOMAIN IN COMPLEX WITH COGNATE DNA (B3 domain-containing transcription repressor VAL1)
reference	'Nucleic 46 4316 2018 X-RAY DIFFRACTION
source	Arabidopsis thaliana
experiment	X-ray (resolution=1.90, R-factor=0.174)
structural superfamily	DNA-binding pseudobarrel domain;
sequence family	B3 DNA binding domain;
redundant complexes	5yzy_C 5yzz_C 5z00_K 6j9a_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fas_B interface=16,21,23,25,62,64,65,69, mnlnivplfektlsaSdagrIgRlVlpkaaeayfppisqsegiplkiqdvrgrewtfqfryWpNNnsrMyvlegvtpciqsmmlqagdtvtfsrvdpggklimgsrkaa
interface signature	SIRVWNNM

Estimated binding specificities ?

readout + contact

# IC=4.444 IC/col=0.889 n_of_columns=5

specificity:

A |   0   3  86   2   7
C |   0  73   3   3   4
G |  93   4   5   5  81
T |   3  16   2  86   4

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----STITRGVTWCNCNGMA------   L         +---------------5yzz_C    
                                   +-----2 
  ----STITRGVTWCNCNTMA------   L   !     !              +6fas_B    
                                 --3     +--------------1 
  KA--STLTRGITWCNTNTMA------   L   !                    +6j9b_A    
                                   ! 
  --RG--TAYCWC--ET--FADCRGRC   L   +---------------------3zi5_A

home
updated Tue Dec 19 12:48:23 2023