5o63_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF UBALAI RESTRICTION ENDONUCLEASE B3 DOMAIN DOMAIN (MUTANT L24M L53M L95M) WITH COGNATE DNA (RESTRICTION ENDONUCLEASE UBALAI)
reference	Tamulaitiene et al. 'Nucleic 45 9583 2017
source	UNIDENTIFIED
experiment	X-ray (resolution=1.60, R-factor=0.162)
structural superfamily	DNA-binding pseudobarrel domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5o63_B interface=32,37,38,41,84,86,87,89,91, mnelikyakelvrsagktlksaamfakvltpNddsgRHgvLvpteaysffpdmpisdpsqnatsnfpafdslskthktlaykyYeRYpErRitrmhgllnernydprltiflfarhtdgssgyyfdcansgsggrfevlfalcfgeaispkaglfvvrpid
interface signature	NRHLYRYER

Estimated binding specificities ?

readout + contact

# IC=7.139 IC/col=1.020 n_of_columns=7

specificity:

A |  24   0   0  96   0   0  12
C |  48  96  96   0   0   0  12
G |  12   0   0   0  96  96  60
T |  12   0   0   0   0   0  12

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --NARGHG--LCYCRGYGECRT   L                   +-----------5o63_B    
                                             +-3 
  --STIT--RGVTWCNCNT--MA   L                 ! !           +6fas_B    
                                 +-----------4 +-----------1 
  --STIT--RGVTWCNCNG--MA   L     !           !             +5yzz_C    
                               +-5           ! 
  KASTLT--RGITWCNTNTMA--   L   ! !           +-------------6j9b_A    
                               ! ! 
  --ST----RG--WCNC------   L --6 +-------------------------6j9c_D    
                               ! 
  --STHG----STRC--PTRG--   L   !                         +6sdg_B    
                               +-------------------------2 
  --STHG------RG--PTRG--   L                             +6ycq_A

home
updated Tue Dec 19 11:02:03 2023