3do7_A : 3D-footprint complex

structure name	X-RAY STRUCTURE OF A NF-KB P52/RELB/DNA COMPLEX (AVIAN RETICULOENDOTHELIOSIS VIRAL V-REL...)
reference	Huang et al. 'TO ? ? ?
source	MUS MUSCULUS
experiment	X-ray (resolution=3.05, R-factor=0.230)
structural superfamily	p53-like transcription factors;E set domains;
sequence family	Rel homology domain RHD; IPT/TIG domain;
redundant complexes	2v2t
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3do7_A interface=30,32,33,35,36,38,187, sctlgrlvspgpcprpylviteqpkqrgmRfRYeCEgRsagsilgessteasktqpaielrdcgglrevevtaclvwkdwphrvhphslvgkdctdgvcrvrlrphvsprhsfnnlgiqcvrkkeieaaierkiqlgidpynagslknhqevdmnvvricfqasyrdqqghlhrmdpilsepvydkKstntselricrinkesgpctggeelyllcdkvqkedisvvfstaswegradfsqadvhrqiaivfktppyedleisepvtvnvflqrltdgvcseplpftylprdhdsy
interface signature	RRYCERK

Estimated binding specificities ?

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# IC=3.101 IC/col=0.775 n_of_columns=4

specificity:

A |   0   0  54  54
C |   0   0  13  13
G |  96  96  13  13
T |   0   0  16  16

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RGRGYTCTECRG----KT----   L     +-3do7_A    
                               +-3 
  RGRGYTCTEC--SG--RT----   L   ! ! +2i9t_A    
                               ! +-2 
  RGRG----EC------RGPTKT   L --4   ! +2ram_A    
                               !   +-1 
  RGRGYTCTEC------RT----   L   !     +1gji_A    
                               ! 
  RGRGYTCCEC----HGKG----   L   +---1a3q_A

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updated Mon Dec 18 07:48:42 2023