| structure name | CRYSTAL STRUCTURE OF HETERODIMERIC ECDSYONE RECEPTOR DNA BINDING COMPLEX (RETINOIC ACID RECEPTOR RXR-ALPHA) |
| reference | Devarakonda et al. 'Embo 22 5827 2003 |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=2.60, R-factor=0.233) |
| structural superfamily | Glucocorticoid receptor-like DNA-binding domain; |
| sequence family | Zinc finger, C4 type two domains; |
| multimeric complexes | 1by4_BC 1dsz_AB 1r0n_AB 1ynw_AB 2nll_AB 4cn2_CD 4cn3_AD 4cn3_BC 4cn5_AB 4cn7_AB 4cn7_EF 6fbq_AB 6fbr_AB 6xwg_CD 6xwh_CD |
| reference complex | 6fbq_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | EKKR |
Estimated binding specificities ?
readout + contact |  |
A | 0 0 60 0 12 C | 0 0 12 96 60 G | 0 84 12 0 12 T | 96 12 12 0 12scan! |
Dendrogram of similar interfaces ?
matrix format----EAKG--RTRG---- L +1kb2_B +-----------8 --CAECKG--KGRG---- L +---14 +6l6q_B ! ! ----ECKG--KGRG---- L ! +------------3e00_A ! ----ECKG--KGRG---- L ! +1r0n_A ! +---6 ----ECKG----RA---- L ! ! +5krb_G ! ! ------KAVA--RA---- L +-----15 +----11 +5e69_A ! ! ! ! +-2 ------KGVT--RG---- L ! ! ! ! ! +5cbz_E ! ! ! +-9 ------KAVG--RG---- ! ! ! ! +5va7_A ! ! ! ! +-3 ------KGVT--RG---- ! ! ! +-5 +5emc_A ! ! ! ! ----ECKG--KGRG---- L ! +------13 +4nqa_H ! ! ST--ECKG--KGRG---- L ! ! +6fbq_A -16 ! +--1 ----EAKG--RTRTRT-- ! ! ! +4umm_E ! ! +----10 ----ECKG--KGRG---- L ! ! ! ! +1ynw_B ! ! ! +--7 ----ECKG--RGRG---- L ! +-12 +3dzy_D ! ! ------KGVG--RG---- L ! ! +4tnt_B ! +--------4 ------KGVT--RG---- L ! +1glu_A ! ----DAKG--RGRG--RT L +------------------------4iqr_B |
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updated Mon Dec 18 05:55:34 2023