6xwh_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RXR DNA-BINDING DOMAIN HOMODIMER BOUND TO THE HUMAN HOXB13 DR0 RESPONSE ELEMENT
reference	Poussin-Courmontagne et al. 'Nucleic 48 9969 2020
source	Homo sapiens
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6xwh_C interface=23,26,30,31,79, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRq > 6xwh_D interface=22,25,29,30, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeer
interface signature	EKKRR/EKKR

Estimated binding specificities ?

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# IC=9.852 IC/col=0.896 n_of_columns=11

specificity:

A |   0   0   5   0  73  24   5   0  11   0  86
C |   0   0  13  96  13  24  24   0  67  96   0
G |  96  96   5   0   5  24  67  96  13   0   5
T |   0   0  73   0   5  24   0   0   5   0   5

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updated Sat Dec 16 22:39:15 2023