4cn5_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN NR1D1 RESPONSE ELEMENT
reference	Poussin-Courmontagne et al. Sci.Rep. 5 8216 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cn5_A interface=25,28,32,33,81, mftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeR > 4cn5_B interface=12,22,25,29,30,75, khicaicgdrsSgkhygvyscEgcKgffKRtvrkdltytckdclidkrqrnrcqycryqkclamgmkreavqeeR
interface signature	EKKRR/SEKKRR

Estimated binding specificities ?

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# IC=12.618 IC/col=0.971 n_of_columns=13

specificity:

A |   4   0  96  96   0   4  24   9   0  81   0   0   4
C |   9   0   0   0  96  19  24   4   0   4  96  96  81
G |   9  96   0   0   0   9  24   4  96   7   0   0   4
T |  74   0   0   0   0  64  24  79   0   4   0   0   7

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updated Fri Dec 15 18:48:13 2023