| structure name | EVEN-SKIPPED HOMEODOMAIN COMPLEXED TO AT-RICH DNA (Segmentation Protein Even-Skipped) |
| reference | Aggarwal et al. 'EMBO 14 6280 1995 |
| source | Drosophila melanogaster |
| experiment | X-ray (resolution=2.00, R-factor=?) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 1jgg_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RYRVQNMKR |
Estimated binding specificities ?
| readout + contact |  |
A | 7 73 94 0 C | 46 5 1 0 G | 7 12 1 1 T | 36 6 0 95scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: EVEN-SKIPPED | ||
| TCAATTAAAT | PubMed | 1jgg_AB(9.82e-08) |
| AACAAT | PubMed | 1jgg_B(3.15e-03) |
Dendrogram of similar interfaces ?
matrix formatRT------------------NT--NAITRG-- L +-------5zjt_B +------------7 RT------------RTQT--ITQANAVTKT-- L ! +-------2ld5_A ! --HTRT--------------NCSTNARG---- L ! +1k61_B ! +-3 RT------------------NT--NA--RG-- L ! +---------5 +1b8i_B +-13 ! ! --------------------NCITNARGRG-- L ! ! +-8 +6fqq_E ! ! ! ! RT------------------IAKGNA------ L ! ! ! ! +2hdd_A ! ! +--9 +----------2 --------------------IA--NA------ ! ! ! ! +4qtr_D ! +---11 ! RA----------------KGSAQA-------- L ! ! +------------6j5b_C ! ! --NGRGTG--LG--LCRG-------------- +---14 +---------------4e9f_A ! ! RT----------------KTIAQCNA----RT L ! ! +1ig7_A ! ! +-4 RA------------------ITQTNAMG---- L ! ! ! ! +5zjt_E ! ! +------------6 +-1 RT------------------NT--NAIARG-- L ! ! ! ! +1b72_B +--15 ! +--10 ! RT------------------ITQCNAACRG-- L ! ! ! ! ! +--6a8r_A ! ! +-12 ! RA------YA----------IAQCNAYCKG-- L ! ! ! +---------------5flv_I -16 ! ! ------------YTVC--KGDCKC-------- L ! ! +-------------------2qhb_A ! ! ----------------NTTCTA---------- L ! +-------------------------5zux_A ! RT----------------QTVAQTNA------ L +-----------------------------3a01_F |
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updated Tue Dec 19 05:47:58 2023