1hlz_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT (ORPHAN NUCLEAR RECEPTOR NR1D1)
reference	Rastinejad et al.
source	Homo sapiens
experiment	X-ray (resolution=2.80, R-factor=0.260)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	Zinc finger, C4 type two domains;
multimeric complexes	1a6y_AB 1ga5_AB 1ga5_EF 1hlz_AB
reference complex	1a6y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hlz_B interface=24,27,31,32,79,81, gmvllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgR
interface signature	EKRRFR

Estimated binding specificities ?

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# IC=8.431 IC/col=0.843 n_of_columns=10

specificity:

A |   0   0  96   0   0  16  24  24   0  16
C |   0   0   0  96  96  13  24  24   0  13
G |   0  96   0   0   0  13  24  24   0  13
T |  96   0   0   0   0  54  24  24  96  54

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updated Mon Dec 18 05:10:12 2023