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structure nameREVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
(ORPHAN NUCLEAR RECEPTOR NR1D1)
referenceKhorasanizadeh et al. Mol.Cell 1 849 1998
sourceHomo sapiens
experimentX-ray (resolution=2.30, R-factor=?)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1a6y_AB 1ga5_AB 1ga5_EF 1hlz_AB
redundant complexes1ga5_B 1hlz_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHEKRRF

Estimated binding specificities ?

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# IC=5.089 IC/col=0.848 n_of_columns=6 specificity:   
A |  57   0   0  11   0  67
C |   9   0   0   9  96   9
G |  19  96  96  19   0   1
T |  11   0   0  57   0  19
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Dendrogram of similar interfaces ?

matrix format
  
  ECKG--RGRG--FT   L      +-----------------------------3dzy_D    
                       +-12  
  ECKA--RGRG----   L   !  +-----------------------------4nqa_I    
                       !  
  DGKG--RTRG----   L   !                              +3cbb_A    
                       !                   +----------1 
  ECKG--KGRG----   L   !                   !          +2ff0_A    
                       !           +-------8 
  ECKG--KGRG----   L -13           !       !          +1ynw_B    
                       !           !       !        +-2 
  EAKG--RTRTRT--       !        +-10       +--------5 +4umm_E    
                       !        !  !                ! 
  ECKG--KGRG----       !        !  !                +-3dzy_A    
                       !        !  !  
  ECKG--RGRG----   L   !        !  +------------------5uan_B    
                       !        !  
  EAKG--KTRG----   L   +-------11                    +2han_A    
                                !                 +--3 
  ECKG--RGRG----   L            !        +--------7  +2nll_B    
                                !        !        ! 
  --KGVT--RG----   L            !        !        +--5cbz_E    
                                +--------9 
  ETKGAT--RG----   L                     !           +1lat_A    
                                         !         +-4 
  --KGVT--RG----                         +---------6 +1r4i_A    
                                                   ! 
  ECKG--KTRG----   L                               +-2nll_A    
                     

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updated Tue Dec 19 05:22:14 2023