1ga5_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT (ORPHAN NUCLEAR RECEPTOR NR1D1)
reference	Rastinejad et al.
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=0.236)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	Zinc finger, C4 type two domains;
multimeric complexes	1a6y_AB 1ga5_AB 1ga5_EF 1hlz_AB
reference complex	1a6y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ga5_B interface=15,22,25,29,30,77, vllckvcgdvasgfHygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgr
interface signature	HEKRRF

Estimated binding specificities ?

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# IC=6.141 IC/col=0.682 n_of_columns=9

specificity:

A |  81  24  24  62   0   1   5   0  79
C |   5  24  24  13   0   0   5  96   7
G |   5  24  24  16  96  90  16   0   5
T |   5  24  24   5   0   5  70   0   5

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updated Mon Dec 18 05:07:28 2023