interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS
(PROTEIN MAT-ALPHA2 HOMEODOMAIN)
referenceWolberger et al.
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=2.70, R-factor=0.226)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
multimeric complexes1akh_AB 1apl_CD 1le8_AB 1yrn_AB
reference complex1le8_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNSNR

Estimated binding specificities ?

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# IC=5.766 IC/col=0.824 n_of_columns=7 specificity:   
A |  54  96  24  13  96   0  96
C |  13   0  24  13   0  96   0
G |  16   0  24  16   0   0   0
T |  13   0  24  54   0   0   0
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updated Mon Dec 18 04:56:52 2023