1yrn_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
reference	Johnson et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1le8_A 1le8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1yrn_A interface=39,40,43,44,47,48, ispqarafleqvfrrkqslnskekeevakkcgitplqvRVwfINkrMRs > 1yrn_B interface=5,8,51,54,55,58, tkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkektitiapeladllsgepl
interface signature	RVINMR/RRNSNR

Estimated binding specificities ?

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# IC=13.223 IC/col=0.778 n_of_columns=17

specificity:

A |   2   0  96  24   3  24  58  90  24  24  89  15  10   0  93   0  96
C |   2   0   0  24   2  24  10   2  24  24   3   2  15   0   0  96   0
G |   3  96   0  24  89  24  15   2  24  24   2   3  15   0   0   0   0
T |  89   0   0  24   2  24  13   2  24  24   2  76  56  96   3   0   0

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updated Fri Dec 15 11:28:44 2023