1apl_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS
reference	Wolberger et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1le8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1apl_C interface=1,5,48,51,52,55, YrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1apl_D interface=4,47,50,51,54, rghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt
interface signature	YRNSNR/RNSNR

Estimated binding specificities ?

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# IC=13.315 IC/col=0.832 n_of_columns=16

specificity:

A |   2   0   2   0  72  24   2   5  24  82  12  24   4  96   0  90
C |   2   2   4   0   9  24   2   2  24   5   2  24   2   0  96   4
G |   2   1  88   0   5  24   4   4  24   5   2  24   2   0   0   0
T |  90  93   2  96  10  24  88  85  24   4  80  24  88   0   0   2

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updated Fri Dec 15 08:38:30 2023