interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE HUMAN RXR DNA-BINDING DOMAIN HOMODIMER BOUND TO THE HUMAN HOXB13 DR0 RESPONSE ELEMENT
(Retinoic acid receptor RXR-alpha)
referencePoussin-Courmontagne et al. 'Nucleic 48 9969 2020
sourceHomo sapiens
experimentX-ray (resolution=2.10, R-factor=0.187)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1by4_BC 1dsz_AB 1r0n_AB 1ynw_AB 2nll_AB 4cn2_CD 4cn3_AD 4cn3_BC 4cn5_AB 4cn7_AB 4cn7_EF 6fbq_AB 6fbr_AB 6xwg_CD 6xwh_CD
reference complex6fbq_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKKRR

Estimated binding specificities ?

readout + contactlogo
# IC=4.516 IC/col=0.903 n_of_columns=5 specificity:   
A |  13   0  57   0   0
C |  13   0  13  96  96
G |  13  96  13   0   0
T |  57   0  13   0   0
scan!

home
updated Mon Dec 18 19:23:04 2023