| structure name | SIGM28-TRANSCRIPTION INITIATION COMPLEX WITH SPECIFIC PROMOTER AT THE STATE 1 (RNA POLYMERASE SIGMA FACTOR FLIA) |
| source | ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) |
| experiment | NMR |
| structural superfamily | Sigma2 domain of RNA polymerase sigma factors;Sigma3 and sigma4 domains of RNA polymerase sigma factors; |
| sequence family | Sigma70 region 3; Sigma70, region 4; Sigma70 region 2; |
| redundant complexes | 6pmj |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | PRHVRLQTYQRLLDRRLWRED |
Estimated binding specificities ?
| contact |  |
A | 0 96 0 96 0 0 0 16 96 0 0 24 16 72 C | 0 0 0 0 0 96 0 0 0 0 96 24 56 8 G | 0 0 96 0 96 0 0 16 0 0 0 24 8 8 T | 96 0 0 0 0 0 96 64 0 96 0 24 16 8scan! |
Dendrogram of similar interfaces ?
matrix format--PGLGRAHCLG--VTRALA----------QATA----TAYA--QARC----LC--LTDTRT--RT--------------------LG----WARGET----DAIA---------------------------- L +-6pmi_F +----3 NTRGLT------YA--------FG--FAEARAFAKTSTTAYATCWTWTRCQTNARG----VGHT--ECIT----RA--RA--AT--------IG--DGEG--SG--FG----LTTTRGECRCRTQC-------- L ! ! +4xln_F +-4 +-1 NTRGLT------------------KTFAEARAFA--SATAYATA--WTRA------------------------------------------IG------DG----FG-------------------------- ! ! +6kqf_F ! ! NTRGLT----------RC--------FADAKAYA--SCTAYATCWTWT--QT--------VTHT--EA------RC--RCEC--EGIASAQAIC----EGDGSG--FG------TTRGECRTRCQT-------- L +------6 +------6edt_F ! ! NTRTLT----------------LA--FADARA--RTSCTAYATCWTWC--QCEARG----ITHG--KC------------------------------------------------RGET--RC---------- L ! ! +6omf_F +----7 +-------2 --------------------------FADA------STTCYATTWTWG--QA--RG----------------------------------------------------------------EC----QT------ ! ! +6wmr_Z +---8 ! NTRGLT--------NCRT----FT--FAEARAYA--STTAYATTWTWT--QTTART------HG--EA--NTNT----RT------------IG------------FG----LTTTRGECRTRTQT-------- L ! ! +---------------6xl5_F +--9 ! --DGQG--------------RTPG--------TTNT------------------------------------------------------------------------PCFCYG------TGMGSG----RGQC L ! ! +--------------------5zx2_F ! ! ----------------------------------------------------------------------------KT----------------------------RG-------------------------- +-11 +------------------------6jcy_F ! ! ----------------------------------------------------KT------------------------------------------------------------------TGRTSG--FTRC-- L ! ! +------------------------6jbq_F ! +-10 ------------------------------------------------------------------------------------------------------------------TTRG--ATSTQT----RG-- L -12 ! +------5clv_J ! +-----------------5 ----------------------------------------------------------------------------------------------------------------LG------TAKGTA--HTRG-- L ! +------6jhe_A ! ------------------------------------------------------------------------------------------------------------------TTRGECRTRCQT-------- L +----------------------------1rio_H |
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updated Mon Dec 18 17:25:52 2023