6jbq_F : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF ESCHERICHIA COLI SIGMAE TRANSCRIPTION INITIATION COMPLEX CONTAINING 5NT OF RNA (ECF RNA POLYMERASE SIGMA-E FACTOR)
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	NMR
structural superfamily	Sigma2 domain of RNA polymerase sigma factors;Sigma3 and sigma4 domains of RNA polymerase sigma factors;
sequence family	Sigma70 region 2; Sigma70, region 4;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jbq_F interface=31,38,39,52,56,59,60,61,63,68,69,71,72,73,76,79,80,83,87,98,102,152,165,167,168,171,172, ltdqvlvervqkgdqkafnllvvryqhkvaSlvsryvPSgdvpdvvqeafiKayrAldSFRgDsafyTWlYRIavNtaKNylVaqgRrppssdvdaiEaenFesggalkeisnpenlmlseelrqivfrtieslpedlrmaitlreldglsYeeiaaimdcpvgTvRSriFRareaidnkvqplir
interface signature	SPSKASFRDTWYRINKNVREFYTRSFR

Estimated binding specificities ?

contact

# IC=15.201 IC/col=0.490 n_of_columns=31

specificity:

A |   4  24   0  24  24   0   0   0  81  24   4  24  24  24  24  24  24  24  24  24  24  24  24  24  81   0   0   0   4   4   0
C |   4  24   0  24  24   0   0  96   4  24   4  24  24  24  24  24  24  24  24  24  24  24  24  24   4   0   0   0  81  81   0
G |  84  24  96  24  24   0   0   0   4  24   7  24  24  24  24  24  24  24  24  24  24  24  24  24   7  92   0   0   4   4  96
T |   4  24   0  24  24  96  96   0   7  24  81  24  24  24  24  24  24  24  24  24  24  24  24  24   4   4  96  96   7   7   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----SC--PTSC--KTATSCFCRC--DC------TAWTYARTIT--NT--KCNC--VTRAEG--FG----YA------TGRTSGFTRC--   L                   +-------6jbq_F    
                                                                                                              +----1 
  DGQG--LG--PG--KT----FTRT----TTNTKGAGWTYGRTITTGNTYAICNCYA--RG------PCFCYG------TGMGSG--RGQC   L        +-----2    +-------5zx2_F    
                                                                                                        !     ! 
  ------------FG------FAEARA--FAKTSTTAYATCWT----------------------------LTTTRGECRCRTQC------   L   +----3     +------------4xln_F    
                                                                                                   !    ! 
  DG----LG--PG--KT----FTRT----TTNT--AGWTYGRTITTGNT--------------PT--------------------------     --4    +------------------6jcy_F    
                                                                                                   ! 
  ----------------------------------------------------------------------LG------TAKGTAHTRG--   L   +-----------------------6jhe_A

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updated Mon Dec 18 15:39:10 2023