6p7b_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FOWLPOX VIRUS RESOLVASE AND SUBSTRATE HOLLIDAY JUNCTION DNA COMPLEX (Holliday junction resolvase)
reference	Banerjee et al. 'Sci 10 393 2020
source	Fowlpox virus
experiment	X-ray (resolution=3.32, R-factor=0.213)
structural superfamily	Ribonuclease H-like;
sequence family	Poxvirus A22 protein;
multimeric complexes	6p7b_ABC
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6p7b_B interface=61,64,69,73,90,94,98,99, miicsvdigiknpayaifnydntsntikliaieksdwtknwersvardltrynpdvvileKqgFkspnSkiiYfikgffynsntkvivrNptfKggsYRnrkkqsidvfiqkiseytdykndilnkytklddiansfnlglsymesll
interface signature	KFSYNKYR

Estimated binding specificities ?

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# IC=5.005 IC/col=0.417 n_of_columns=12

specificity:

A |  73   0  24  24  24  24   0   7  24  24   9   7
C |   7   0  24  24  24  24   0   7  24  24   7   7
G |   7  96  24  24  24  24   0   7  24  24   7  75
T |   9   0  24  24  24  24  96  75  24  24  73   7

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Dendrogram of similar interfaces ?

matrix format

  
  KC----FG----SC--YC--NC--KTYARG   L                       +------6p7b_B    
                                              +------------1 
  ----FA--RT--------------------           +--2            +------6s16_B    
                                           !  ! 
  --------DCKG------------------       +---3  +-------------------6kvo_A    
                                       !   ! 
  SGPC--------------------------   L --4   +----------------------6is8_B    
                                       ! 
  ------PTMT----RT--IT--NT------   L   +--------------------------4ncb_B

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updated Tue Dec 19 14:02:46 2023