interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.55, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex1puf_B 4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKIQNMK/NNIR

Estimated binding specificities ?

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# IC=8.538 IC/col=0.854 n_of_columns=10 specificity:   
A |  11   0  96   0  90   7  96   7  24   5
C |   5   0   0   5   1   5   0  11  24  13
G |   5  96   0   1   0   5   0   5  24  67
T |  75   0   0  90   5  79   0  73  24  11
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updated Fri Dec 15 20:45:33 2023