| structure name | CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS (HOMEOTIC PROTEIN ULTRABITHORAX) |
| reference | Ortiz-Lombardia et al. Structure 23 270 2015 |
| source | DROSOPHILA MELANOGASTER |
| experiment | X-ray (resolution=2.36, R-factor=0.213) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 1b8i_AB 4cyc_AB 4uus_AB 4uus_EF |
| redundant complexes |  1b8i_A
4uus_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RIQNMK |
Estimated binding specificities ?
| readout + contact |  |
A | 17 8 84 10 C | 16 16 4 10 G | 19 9 4 13 T | 44 63 4 63scan! |
Dendrogram of similar interfaces ?
matrix format----RA------IAQTNA-------- L +5ego_B +---------------------1 ----RA------YAQTNAAARG---- L ! +6wig_A ! ----RA------IAQTNAMC------ L ! +-------------1puf_A ! +----11 --YARA------IAQTNA-------- L ! ! ! +----6es3_K +-14 ! +--------7 ----RT------ITQCNAACRG---- L ! ! ! ! +6a8r_A ! ! ! +---3 --RC--RT----NCSTNARG------ L ! ! ! +1mnm_C ! ! ! ----RT----QTVAQTNA-------- L ! ! ! +3a01_F ! ! ! +--4 ----RT------NT--NA-------- L ! +-13 +------6 +5zjt_B ! ! ! ! ----RT----FTYAQTNAATRG---- L ! ! +--9 +---6ryd_F ! ! ! ! ----RT------VAQTNA-------- L +-15 ! ! ! +5hod_A ! ! ! +---10 +---------2 RT--RT------IAKGNA-------- L ! ! ! ! ! +6m3d_C ! ! ! ! ! ----RT------IAQTNASG------ L ! ! ! ! ! +-----5zfz_A ! ! +-12 +-------8 ----------RTVAITNAMCRG---- L ! ! ! +-----1yrn_A +-16 ! ! --YART------IAQTNA-------- L ! ! ! ! +--5lux_K ! ! ! +---------------5 ----------RCVACTNAQA------ L ! ! ! +--7xrc_C +-17 ! ! ----RA----RCVTCTNAQTRC---- L ! ! ! +------------------------1au7_A ! ! ! RG------RAKAITQTNAMC------ L -18 ! +-------------------------1ahd_P ! ! ----RT------IAQCNAYA--RT-- L ! +--------------------------1nk2_P ! ----RT------ITQTNASGRA--RC L +---------------------------6u81_A |
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updated Tue Dec 19 08:41:01 2023