interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF ALKB E136L MUTANT PROTEIN WITH COFACTORS BOUND TO DSDNA CONTAINING M6A/A
(Alpha-ketoglutarate-dependent dioxygenase AlkB)
referenceZhu et al. Angew.Chem.Int.Ed.Engl. 53 3659 2014
sourceEscherichia coli
experimentX-ray (resolution=1.37, R-factor=0.160)
structural superfamilyClavaminate synthase-like;
sequence family2OGFeII oxygenase superfamily;
redundant complexes3bi3_A 3bie_A 3bkz_A 3khc_B 3o1m_A 3o1o_A 3o1p_A 3o1r_A 3o1s_A 3o1t_A 3o1u_A 3o1v_A 4nid_A 4nig_A 4nii_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureCKR

Estimated binding specificities ?

contactlogo
# IC=1.486 IC/col=0.372 n_of_columns=4 specificity:   
A |   9   8  10  49
C |   9   8  13  15
G |  67  72  10  15
T |  11   8  63  17
scan!

home
updated Tue Dec 19 09:09:53 2023