interface graph thumbnail
legend  pdf

structure nameX-RAY STRUCTURE OF E COLI ALKB BOUND TO DSDNA CONTAINING 1MEA/T WITH MN AND 2KG
(Alpha-ketoglutarate-dependent dioxygenase alkB)
referenceYang et al. Nature 452 961 2008
sourceEscherichia coli K12
experimentX-ray (resolution=1.68, R-factor=0.188)
structural superfamilyClavaminate synthase-like;
sequence family2OGFeII oxygenase superfamily;
reference complex4nih_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureCR

Estimated binding specificities ?

contactlogo
# IC=3.142 IC/col=0.786 n_of_columns=4 specificity:   
A |   0   0  13  13
C |   0   0  16  13
G |  96  96  13  13
T |   0   0  54  57
scan!

home
updated Mon Dec 18 07:38:59 2023