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structure nameX-RAY STRUCTURE OF THE COMPLEX BETWEEN HUMAN THROMBIN AND THE TBA DELETION MUTANT LACKING THYMINE 12 NUCLEOBASE
(THROMBIN HEAVY CHAIN)
referenceRusso Krauss et al. 'Febs 280 6581 2013
sourceHOMO SAPIENS
experimentX-ray (resolution=1.65, R-factor=0.157)
structural superfamilyTrypsin-like serine proteases;
sequence familyTrypsin;
multimeric complexes1hap_HL 1hut_HL 4dih_HL 4dii_HL 4lz4_CD 6evv_HL 6gn7_HL 7zkl_HL
redundant complexes5cmx 6evv 6eo6 1hut 4lz4 5ew1 4dii 6eo7 1hap 4dih 3qlp 5ew2 1hao 4i7y 6gn7
reference complex6z8v_H
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIHRYRI

Estimated binding specificities ?

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# IC=8.185 IC/col=0.682 n_of_columns=12 specificity:   
A |   0   0   0   0  24  24  24  24  24  14   0   0
C |   0   0   0   0  24  24  24  24  24  14   0   0
G |  96   0   0  96  24  24  24  24  24  52   0  96
T |   0  96  96   0  24  24  24  24  24  16  96   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: ALPHA-THROMBIN
GGTTGGTGTGGTTGGPubMed1hut_HL(2.91e-03), 6evv_HL(1.13e-02), 5cmx_H(1.22e-05), ... (total=6)

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updated Mon Dec 18 10:53:35 2023