4cyc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
reference	Ortiz-Lombardia et al. Structure 23 270 2015
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.36, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1puf_B 4cyc_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cyc_A interface=7,49,52,53,56,60, fypwmaRqtytryqtlelekefhtnhyltrrrriemahalclterqikIwfQNrrMklkKeiqaik > 4cyc_B interface=1,45,49,52,53, RnfskqaseilneyfyshlsnpypseeakeelarkcgitvsqvsNwfgNkrIRykkni
interface signature	RIQNMK/RNNIR

Estimated binding specificities ?

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# IC=12.775 IC/col=1.065 n_of_columns=12

specificity:

A |   0   0   0  96   0   0   0  96  14  14   0   7
C |   0   0   0   0   0   0   0   0  14  14   1  73
G |  96   0  96   0   0   0   0   0  17  61  88   9
T |   0  96   0   0  96  96  96   0  51   7   7   7

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updated Fri Dec 15 18:49:15 2023