| structure name | RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE DG AT 1.8 ANGSTROM RESOLUTION (DNA polymerase) |
| reference | Konigsberg et al. Biochemistry 50 581 2011 |
| source | Enterobacteria phage RB69 |
| experiment | X-ray (resolution=1.79, R-factor=0.176) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family B, exonuclease do; |
| redundant complexes | 2dtu 1q9y 3sq2 2dy4 3rmb 3ne6 3kd5 3rmc 3tag 3sq4 2p5g 2p5o 3sun 3cq8 3tab 3nae 3l8b 2ozs 3tae 2oyq 3taf 1q9x 3lzj 3rma 3ngi 3kd1 3spy 3nhg 3rmd 3ndk 3lds 3s9h 3lzi 3sjj 2ozm 1ig9 3spz 3rwu 1clq 3sq0 3sq1 3scx 3snn 3suq 3cfr 3qep 3cfp 3si6 3suo 3sup |
| reference complex | 3qex_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format--------------------EC--------------KC--IC--RCIC----------DA------------FAPG--------------------------LGNGSGYG--------KA--KG--STNT-- +-----------3nci_A +----2 ----------------------------------------------FTQT--------------------RT--SG--------------------------IGNGAGYG--AA----KA--RG----RCNA L ! ! +-----3k59_A +---------3 +-----1 ------IT------------------------------------------------------------------QGQAVT--FTITSAQT------------IGNGSGYGFTVAKTLTKARGRC------NC L ! ! +-----3iay_A +-4 ! PIPIVIIIPGFIKGRI--NT--NTFC----------------DARA----------YT--RG------WG----------WG-------------------------------------------------- ! ! +----------------2xhb_A +-5 ! --------------------------FG----------------------HTPTFG---------------------------------------------------------------------------- ! ! +--------------------------3nh1_A +-6 ! ----------------LC----------NGKGYG----------------------MG----RCFCEC---------------------------------------------------------------- ! ! +---------------------------1kln_A --7 ! ----------------------------------NG--IA------------------YG----------------------------------------------------------------LT------ ! +----------------------------2py5_B ! ------------------------------------------------------------------------------------------RGNCYGATCTRG------------------------------ L +-----------------------------2wt7_B |
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updated Mon Dec 18 08:35:32 2023