interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DCTP TERNARY COMPLEX
(DNA polymerase II)
referenceYang et al. 'Cell(Cambridge,Mass.)' 139 1279 2009
sourceEscherichia coli
experimentX-ray (resolution=1.92, R-factor=?)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B;
redundant complexes3k57_A 3k58_A 3k5l_A 3k5m_A 3k5n_A 3maq_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRRN

Estimated binding specificities ?

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# IC=3.142 IC/col=0.786 n_of_columns=4 specificity:   
A |   0   0  13  54
C |  96   0  13  13
G |   0  96  13  13
T |   0   0  57  16
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Tue Dec 19 07:42:22 2023