interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A HIGHER-ORDER COMPLEX OF P50:RELA BOUND TO THE HIV-1 LTR
referenceStroud et al. J.Mol.Biol. 393 98 2009
experimentX-ray (resolution=3.59, R-factor=?)
structural superfamilyp53-like transcription factors;E set domains;
sequence familyRel homology domain RHD; IPT/TIG domain;
multimeric complexes1le5_AB 1le5_EF 1le9_AB 1le9_EF 1lei_AB 1nfk_AB 1vkx_AB 2i9t_AB 2o61_AB 3gut_ABD 3gut_CF 3gut_EGH
reference complex1nfk_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCEHK

Estimated binding specificities ?

readout + contactlogo
# IC=3.092 IC/col=0.618 n_of_columns=5 specificity:   
A |   3   3   8  56   6
C |   7   4  10  16  81
G |  81  82  70  15   4
T |   5   7   8   9   5
scan!

home
updated Mon Dec 18 08:01:16 2023