2qby_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A HETERODIMER OF CDC6/ORC1 INITIATORS BOUND TO ORIGIN DNA (FROM S. SOLFATARICUS)
reference	Cunningham Dueber et al. Science 317 1210 2007
source	SULFOLOBUS SOLFATARICUS
experiment	X-ray (resolution=3.35, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;"Winged helix" DNA-binding domain;
reference complex	2qby_A 2qby_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2qby_A interface=106,316,318,321,342,345, ifinreyllpdyipdelphredqirkiasilaplyreekpnnifiygltgtgktavvkfvlsklhkkflgkfkhvyintrqidtpyrvladllesldvkvpftglSiaelyrrlvkavrdygsqvvivldeidafvkkynddilyklsrinsevnkisfigitndvkfvdlldprvksslseeeiifppynaeelediltkraqmafkpgvlpdnviklcaalaarehgdarraldllrvsgeiaermkdtkvkeeyvymakeeierdrvrdiiltlpfhsklvlmavvsisvsttgavyetylnickklgveavTqRrvSdiineldmvgiltakvvnrgRygKtkeiglavdkniivrsliesd > 2qby_B interface=313,315,336,339,343, knpkvfidplsvfkeipfredilrdaaiairyfvknevkfsnlflgltgtgktfvskyifneieevkkedeeykdvkqayvncrevggtpqavlsslagkltgfsvpkhginlgeyidkikngtrniraiiyldevdtlvkrrggdivlyqllrsdanisvimisndinvrdymeprvlsslgpsvifkpydaeqlkfilskyaeyglikgtyddeilsyiaaisakehgdarkavnllfraaqlasgggiirkehvdkaivdyeqerlieavkalpfhyklalrsliesedvmsahkmytdlcnkfkqkplSyRrfsdiiseldmfgivkiriiNrgRaggVkkyalvedkekvlralnetfedsis
interface signature	STRSRK/SRNRV

Estimated binding specificities ?

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# IC=10.200 IC/col=0.637 n_of_columns=16

specificity:

A |  19  24  24  24   6   0   0  24  24  14   0  24   0   6   0  96
C |   6  24  24  24  12  96  96  24  24  64   0  24   0   0  96   0
G |   6  24  24  24  21   0   0  24  24   6  96  24   0   1   0   0
T |  65  24  24  24  57   0   0  24  24  12   0  24  96  89   0   0

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updated Fri Dec 15 12:49:37 2023