| structure name | NMR STRUCTURE OF THE HOMEODOMAIN TRANSCRIPTION FACTOR GBX1 FROM HOMO SAPIENS IN COMPLEX WITH THE DNA SEQUENCE CGACTAATTAGTCG (HOMEOBOX PROTEIN GBX-1) |
| source | HOMO SAPIENS |
| experiment | NMR |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRVKIQNR |
Estimated binding specificities ?
readout + contact |  |
A | 54 0 0 96 96 0 0 96 16 C | 13 96 0 0 0 0 0 0 13 G | 13 0 0 0 0 0 0 0 54 T | 16 0 96 0 0 96 96 0 13scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: GBX1 | ||
| TAATTA | PubMed | 2me6_A(1.18e-08) |
Dendrogram of similar interfaces ?
matrix formatRT----RT--------VA--QTNA---- L +1fjl_B +-1 RC----RT--------IT--QCNAACRG L +---------4 +6a8r_A ! ! --RC--RT--------NT----NA---- L +---8 +5zjt_B ! ! ----RC--RT------NC--STNA---- L ! +---------1mnm_C +-----9 ----------------VA--QTNA---- L ! ! +5hod_A ! ! +-----2 --KG--RT--------IANA--YA--RT L ! +-------6 +1nk2_P +-10 ! --RT------------IA--KGNA---- L ! ! +-----6m3d_C ! ! --------------RTVA--ITNAMCRG L ! ! +1yrn_A +--11 +-------------------3 --------------RCVA--CTNAQA-- L ! ! +7xrc_C ! ! --------------FTYA--QTNAATRG L ! ! +6ryd_F -12 ! +-------5 ------RA--------YA--QTNA---- L ! +------------7 +6wig_A ! ! ----------RCET--SA--QAKT---- L ! +-------6qec_A ! ------RA------RCVT--CTNAQTRC L +------------------------1au7_A |
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updated Mon Dec 18 06:57:31 2023