| structure name | HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE (PAIRED PROTEIN) |
| reference | Wilson et al. 'Cell(Cambridge,Mass.)' 82 709 1995 |
| source | Drosophila melanogaster |
| experiment | X-ray (resolution=2.00, R-factor=0.198) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRVQN |
Estimated binding specificities ?
| readout + contact |  |
A | 9 24 67 0 0 96 9 C | 11 24 9 0 0 0 67 G | 9 24 9 0 0 0 9 T | 67 24 11 96 96 0 11scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PAIRED | ||
| GTTAT | PubMed | 1fjl_B(6.06e-03) |
| TAATT | PubMed | 1fjl_B(1.01e-03) |
| TAATGTTATTA | PubMed | 1fjl_B(1.06e-03) |
Dendrogram of similar interfaces ?
matrix formatRC--RT--------------------ITQCNAACRG L +6a8r_A +--------------4 ----RT--------------------NT--NAIARG L ! +1b72_B ! RT--RT------------------KTIAQCNA---- L +---10 +1ig7_A ! ! +--1 --RCRT--------------------NT--NAITRG L ! ! +--------6 +5zjt_B ! ! ! ! ----RA--------------------ITQTNAMG-- L +-12 +---7 +--5zjt_E ! ! ! --------------------------IA--NA---- ! ! +-----------4qtr_D +-14 ! ----RA------------------KGSAQA------ L ! ! +--------------------6j5b_C ! ! ------------------YTVC--KGDCKC------ L ! +---------------------2qhb_A ! ----RT--------------------IAKGNA---- L ! +2hdd_A ! +------------2 ----RA------YA------------IAQCNAYCKG L -15 ! +5flv_I ! +--8 ----RT------------STVC--KGDCRG------ L ! ! ! +-1w0t_A ! +----11 +----------5 --------------------RTQT--ITQANAVTKT L ! ! ! +-2ld5_A ! ! ! --------MG------TGQAAT--SARG-------- L ! ! +---------------2p5l_D +-13 ----RT--------------------NT--NA--RG L ! +1b8i_B ! +---------------3 --------------------------NCITNARGRG L +-----9 +6fqq_E ! ------NGRGTG--LG----LCRG------------ +---------------4e9f_A |
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updated Tue Dec 19 05:38:06 2023