interface graph thumbnail
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structure nameCATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC- MONOPHOSPHATE
(PROTEIN CATABOLITE GENE ACTIVATOR PROTEIN)
referencePassner et al.
sourceESCHERICHIA COLI
experimentX-ray (resolution=2.20, R-factor=0.237)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
multimeric complexes1cgp_AB 1lb2_ABE 3iyd_ACDFGH 3n4m_ABC 5ciz_AB 6pb4_CDFGH 6pb5_CFGH 6pb6_CDFGH
reference complex3n4m_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRETR

Estimated binding specificities ?

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# IC=5.419 IC/col=0.903 n_of_columns=6 specificity:   
A |  10   0   0   0  96  10
C |  10   0  10   0   0  64
G |  12  96  12  96   0  10
T |  64   0  74   0   0  12
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updated Mon Dec 18 06:37:22 2023