3n4m_ABC : 3D-footprint complex

structure name	E. COLI RNA POLYMERASE ALPHA SUBUNIT C-TERMINAL DOMAIN IN COMPLEX WITH CAP AND DNA
reference	Lara-Gonzalez et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	C-terminal domain of RNA polymerase alpha subunit;
reference complex	3n4m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3n4m_A interface=164,173,174,175,179, tdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrQeigqivgcSREtvgRilkmledqnlisahgktivvygtr > 3n4m_B interface=17, fdpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp > 3n4m_C interface=16, dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	QSRER/R/R

Estimated binding specificities ?

readout + contact

# IC=8.116 IC/col=0.477 n_of_columns=17

specificity:

A |   0   0  78   0  87  24  24  24   8  52  24  24  24  24  24  54  96
C |   0  96   4  96   0  24  24  24   8   8  24  24  24  24  24   4   0
G |   0   0   8   0   5  24  24  24  19   4  24  24  24  24  24   4   0
T |  96   0   6   0   4  24  24  24  61  32  24  24  24  24  24  34   0

scan!

home
updated Fri Dec 15 16:12:54 2023