1cgp_AB : 3D-footprint complex

structure name	CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'- CYCLIC-MONOPHOSPHATE
reference	Schultz et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	C-terminal domain of RNA polymerase alpha subunit;
reference complex	3n4m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cgp_A interface=171,172,173,174,177, ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcSRETvgRilkmledqnlisahgktivv > 1cgp_B interface=171,172,173,174,177, ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcSRETvgRilkmledqnlisahgktivv
interface signature	SRETR/SRETR

Estimated binding specificities ?

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# IC=12.579 IC/col=0.786 n_of_columns=16

specificity:

A |   0   0   6   0  96  70  24  24  24  24   8   0   0  84   0  96
C |   0   0  14   0   0  12  24  24  24  24  12   0  96   0  96   0
G |   0  96   6  96   0   8  24  24  24  24  64  13   0   6   0   0
T |  96   0  70   0   0   6  24  24  24  24  12  83   0   6   0   0

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updated Fri Dec 15 08:44:51 2023