interface graph thumbnail
legend  pdf

structure name4 CRYSTAL STRUCTURES OF CAP-DNA WITH ALL BASE-PAIR SUBSTITUTIONS AT POSITION 6, CAP-[6C;17G]ICAP38 DNA
(Catabolite gene activator)
referenceBerman et al. J.Mol.Biol. 357 173 2006
sourceEscherichia coli
experimentX-ray (resolution=2.10, R-factor=0.242)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
multimeric complexes1cgp_AB 1lb2_ABE 3iyd_ACDFGH 3n4m_ABC 5ciz_AB 6pb4_CDFGH 6pb5_CFGH 6pb6_CDFGH
reference complex3n4m_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQSRE

Estimated binding specificities ?

contactlogo
# IC=4.007 IC/col=0.801 n_of_columns=5 specificity:   
A |   0   0   9  11  69
C |   0   0  67   9   9
G |   0  96   9  67   9
T |  96   0  11   9   9
scan!

home
updated Mon Dec 18 06:31:43 2023