interface graph thumbnail
legend  pdf

structure nameTRANSPOSASE TC3A1-65 FROM CAENORHABDITIS ELEGANS
(PROTEIN TC3 TRANSPOSASE)
referenceVan Pouderoyen et al. 'EMBO 16 6044 1997
sourceCaenorhabditis elegans
experimentX-ray (resolution=2.45, R-factor=0.234)
structural superfamilyHomeodomain-like;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signaturePRHSRHR

Estimated binding specificities ?

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# IC=8.471 IC/col=1.059 n_of_columns=8 specificity:   
A |  60   0  96   0   0  12   0   0
C |  12   0   0   0   0  48  96  96
G |  12   0   0  96  96  12   0   0
T |  12  96   0   0   0  24   0   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RT----HGSGRGHG--RT------   L   +----------------------1u78_A    
                                 ! 
  RT----HGSGRGHG--RT------   L --3                     +1tc3_C    
                                 !      +--------------1 
  --RTQG----PTSGTCSTTC----   L   +------2              +1hlv_A    
                                        ! 
  --KA--------VT--KGDCRGTA   L          +---------------1w0u_A    
                               

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updated Tue Dec 19 06:09:08 2023