structure name | CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA (MAJOR CENTROMERE AUTOANTIGEN B) |
reference | RIKEN Structural Genomics/Proteomics Initiative (RSGI) |
source | HOMO SAPIENS |
experiment | X-ray (resolution=2.50, R-factor=0.222) |
structural superfamily | Homeodomain-like; |
sequence family | CENPB Nterminal DNAbinding domain; Centromere binding protein B, DNA bind; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RQPSTSTTKSNDR |
Estimated binding specificities ?
readout + contact |
A | 0 0 4 0 7 24 79 62 24 0 0 4 0 91 C | 96 0 4 0 4 24 4 16 24 96 0 4 0 0 G | 0 96 2 0 76 24 4 9 24 0 96 79 96 0 T | 0 0 86 96 9 24 9 9 24 0 0 9 0 5scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: CENP-B | ||
CTTCGTTGGAAACGGGA | PubMed | 1hlv_A(1.11e-16) |
CTTCGTTGGAAACGGGT | PubMed | 1hlv_A(6.32e-13) |
TCCCGTTTCCAACGAAG | PubMed | 1hlv_A(1.11e-16) |
TCCCGTTTCCA | PubMed | 1hlv_A(1.87e-10) |
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updated Mon Dec 18 05:10:02 2023