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legend  pdf

structure namePROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
(CATABOLITE GENE ACTIVATOR PROTEIN)
referenceEbright et al.
sourceEscherichia coli
experimentX-ray (resolution=3.00, R-factor=0.260)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
multimeric complexes1cgp_AB 1lb2_ABE 3iyd_ACDFGH 3n4m_ABC 5ciz_AB 6pb4_CDFGH 6pb5_CFGH 6pb6_CDFGH
reference complex3n4m_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRDR

Estimated binding specificities ?

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# IC=2.917 IC/col=0.729 n_of_columns=4 specificity:   
A |   0   0  12  12
C |   0  84  12  60
G |   0   0  60  12
T |  96  12  12  12
scan!

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updated Mon Dec 18 05:32:34 2023