interface graph thumbnail
legend  pdf

structure namePROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
(CATABOLITE GENE ACTIVATOR PROTEIN)
referenceVojtechovsky et al.
sourceEscherichia coli
experimentX-ray (resolution=3.00, R-factor=0.233)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
multimeric complexes1cgp_AB 1lb2_ABE 3iyd_ACDFGH 3n4m_ABC 5ciz_AB 6pb4_CDFGH 6pb5_CFGH 6pb6_CDFGH
reference complex3n4m_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRERK

Estimated binding specificities ?

readout + contactlogo
# IC=6.633 IC/col=0.829 n_of_columns=8 specificity:   
A |   0   0   9   0  67  24   0   9
C |   0  96   9  96   9  24   0   9
G |   0   0  67   0  11  24   0  11
T |  96   0  11   0   9  24  96  67
scan!

home
updated Mon Dec 18 05:32:28 2023