interface graph thumbnail
legend  pdf

structure nameA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE- THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.
(DNA POLYMERASE I)
referenceJohnson et al.
sourceGeobacillus stearothermophilus
experimentX-ray (resolution=1.90, R-factor=0.222)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A;
multimeric complexes6ur9_AD 6us5_AD
reference complex4yfu_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTYRNNRYQH

Estimated binding specificities ?

readout + contactlogo
# IC=3.142 IC/col=0.786 n_of_columns=4 specificity:   
A |   0  13  16   0
C |  96  13  54   0
G |   0  57  13  96
T |   0  13  13   0
scan!

home
updated Mon Dec 18 05:30:30 2023