6us5_AD : 3D-footprint complex

structure name	DNA POLYMERASE I LARGE FRAGMENT FROM BACILLUS STEAROTHERMOPHILUS WITH DNA TEMPLATE, 3'-AMINO PRIMER, DGPNHPP ANALOG, AND MN2+
reference	Lelyveld et al. Proc.Natl.Acad.Sci.USA 117 7276 2020
source	Geobacillus stearothermophilus
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	4yfu_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6us5_A interface=285,289,318,325,328,361,410,413,417,419,420,422,432,484,496,500,532, kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTyiegllkvvrpatkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakAvnYgivYgISdYglaqnlnisRkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnFnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak > 6us5_D interface=318,361,410,417,419,422,432,496,500, kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvrpatkkvhtifnqaltqtgRlsstepnlqnipirleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakAvnygivYgIsdYglaqnlnisRkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvhdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
interface signature	KTRNNEAYYISYRFNQH/REAYIYRNQ

Estimated binding specificities ?

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# IC=6.292 IC/col=0.899 n_of_columns=7

specificity:

A |   7  96   0   0   7   9   7
C |  73   0  96   0  75   7   7
G |   9   0   0  96   7   7  73
T |   7   0   0   0   7  73   9

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updated Sat Dec 16 19:20:12 2023