6ur9_AD : 3D-footprint complex

structure name	DNA POLYMERASE I LARGE FRAGMENT FROM BACILLUS STEAROTHERMOPHILUS WITH DNA TEMPLATE, DIDEOXY PRIMER, 3'-AMINO-DDGTP (NGTP), AND CA2+
reference	Lelyveld et al. Proc.Natl.Acad.Sci.USA 117 7276 2020
source	Geobacillus stearothermophilus
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	4yfu_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ur9_A interface=285,289,290,318,325,328,361,410,417,419,420,422,432,496,500,532, kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpatkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakAvnygivYgISdYglaqnlnisRkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak > 6ur9_D interface=318,417,419,422,427,432,484,485,496,500, kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvrpatkkvhtifnqaltqtgRlsstepnlqnipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivYgIsdYglaqNlnisRkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnFNvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvhdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
interface signature	KTYRNNEAYISYRNQH/RYIYNRFNNQ

Estimated binding specificities ?

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# IC=6.633 IC/col=0.948 n_of_columns=7

specificity:

A |   0  96   0   0  11   9   9
C |  96   0  96   0  67  11  11
G |   0   0   0  96   9   9  67
T |   0   0   0   0   9  67   9

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updated Sat Dec 16 19:19:53 2023