| structure name | CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO RAT OSTEOCALCIN (OC) RESPONSE ELEMENT (Vitamin D3 Receptor) |
| reference | Shaffer et al. 'EMBO 21 2242 2002 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.70, R-factor=?) |
| structural superfamily | Glucocorticoid receptor-like DNA-binding domain; |
| sequence family | Zinc finger, C4 type two domains; |
| multimeric complexes | 1kb2_AB 1kb4_AB 1kb6_AB 1ynw_AB |
| redundant complexes | 1kb4 1ynw 1kb2 |
| reference complex | 1kb2_B |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | EKRRK |
Estimated binding specificities ?
| contact |  |
A | 16 24 54 0 0 C | 13 24 16 96 96 G | 13 24 13 0 0 T | 54 24 13 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: VDR | ||
| GGGTCAGCAAGTTCA | PubMed | 1kb2_AB(1.87e-05), 1kb4_AB(3.77e-03), 1kb6_AB(3.91e-04), ... (total=5) |
| TGAACTCAAAGGAGGTCA | PubMed | 1kb2_A(1.04e-03) |
| AGGTCA | PubMed | 1ynw_AB(2.78e-04), 1kb2_A(1.15e-02) |
| GGGTGAGCAGGGACA | PubMed | 1kb6_AB(4.00e-04) |
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updated Mon Dec 18 05:15:07 2023