1kb2_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO MOUSE OSTEOPONTIN (SPP) RESPONSE ELEMENT
reference	Shaffer et al. 'EMBO 21 2242 2002
source	Homo sapiens
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1kb2_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1kb2_A interface=21,24,28,29,82, ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkr > 1kb2_B interface=21,24,28,29, ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrkrem
interface signature	EKRRK/EKRR

Estimated binding specificities ?

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# IC=9.537 IC/col=0.681 n_of_columns=14

specificity:

A |   5  24   0  85   0   5  24  24  24  10   5  75  90   0
C |   1  24  96   1  96  81  24  24  24   5  11   5   5  96
G |   5  24   0  10   0   0  24  24  24   1  20  11   1   0
T |  85  24   0   0   0  10  24  24  24  80  60   5   0   0

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updated Fri Dec 15 09:19:20 2023