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legend  pdf

structure nameCRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO RAT OSTEOCALCIN (OC) RESPONSE ELEMENT
referenceShaffer et al. 'EMBO 21 2242 2002
sourceHomo sapiens
experimentX-ray (resolution=2.70, R-factor=?)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
reference complex1kb2_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKRRK/EKRR

Estimated binding specificities ?

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# IC=8.832 IC/col=0.589 n_of_columns=15 specificity:   
A |  10   0  24   2   0   8  24  24  24   5  24  60   0   0   0
C |   8   0  24  93  96  30  24  24  24  10  24  14  96  96  87
G |  11  96  24   0   0   8  24  24  24  25  24  11   0   0   4
T |  67   0  24   1   0  50  24  24  24  56  24  11   0   0   5
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updated Fri Dec 15 09:19:37 2023